{ "cells": [ { "cell_type": "markdown", "metadata": { "kernel": "SoS" }, "source": [ "# eQTL discovery pipeline for the GTEx Consortium: RNA-seq preprocessing\n", "\n", "This notebook converts the RNA-seq data processing workflow of [eQTL discovery pipeline for the GTEx Consortium](https://github.com/broadinstitute/gtex-pipeline/tree/63b13b8ced25cf8ab8e7a26f40a495e523630a9b/qtl) (version July 31, 2017), originally written in Python, R and [WDL](https://software.broadinstitute.org/wdl/) into a **single, self-contained SoS script with narratives**." ] }, { "cell_type": "code", "execution_count": 1, "metadata": { "kernel": "SoS" }, "outputs": [ { "data": { "text/html": [ "\n", "
Revision | \n", "Author | \n", "Date | \n", "Message | \n", "
---|---|---|---|
0479b41 | \n", "Gao Wang | \n", "2018-06-13 | \n", "Update workflows |
5cfbede | \n", "Gao Wang | \n", "2018-03-01 | \n", "Fix f-string issue |
19e1665 | \n", "Gao Wang | \n", "2018-03-01 | \n", "Fix UTF8 coding issue |
c71a760 | \n", "Gao Wang | \n", "2018-03-01 | \n", "File renaming |
c083e47 | \n", "Gao Wang | \n", "2018-02-28 | \n", "Update examples |